Program
| Time |
Event |
|
|
11:00 - 12:30
|
Initial connection test (Salle 2: User Connection Test) - jobim2020-contact@lirmm.fr |
|
|
13:00 - 14:00
|
Welcome & Opening remarks (Salle 1: Opening, Keynote Flora Jay) |
|
|
13:00 - 13:10 |
› ouverture de JOBIM 2020 - - |
|
|
13:10 - 13:50 |
› discours des invités d'honneur et créateurs de JOBIM Marie-France Sagot et Olivier Gascuel - - |
|
|
13:50 - 13:55 |
› le mot de la SFBI - - |
|
|
14:00 - 15:00
|
Keynote: Flora Jay (Salle 1: Opening, Keynote Flora Jay) - Creating Artificial Genomes using Generative Networks |
|
|
15:00 - 15:10
|
Break |
|
|
15:10 - 16:10
|
Evolution and Phylogeny (Salle 2: Evolution and Phylogeny) |
|
|
15:10 - 15:30 |
› A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios - Anna Zhukova |
|
|
15:30 - 15:50 |
› Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data - Gonché Danesh |
|
|
15:50 - 16:10 |
› Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints - Florian Massip |
|
|
15:10 - 16:10
|
Networks and Systems (Salle 3: Network and Systems) |
|
|
15:10 - 15:30 |
› Inferring ligand-receptor interactions from single-cell and bulk transcriptomic data - Jacques Colinge |
|
|
15:30 - 15:50 |
› Formalizing and enriching phenotype signatures using Boolean networks - Meline Wery |
|
|
15:50 - 16:10 |
› Inferring biochemical reactions and metabolite structures using a molecular transformation approach - Gabriel Markov |
|
|
16:10 - 16:30
|
Break |
|
|
16:30 - 17:30
|
Posters & demos (Salle virtuelle des posters) - 1 |
|
| Time |
Event |
|
|
09:00 - 10:00
|
Keynote: Kjell Petersen (Salle 1: Keynote Kjell Petersen) - E-infrastructure, platforms and services provided by Elixir Norway |
|
|
10:00 - 11:00
|
Posters & demos (Salle virtuelle des posters) - 2 |
|
|
11:00 - 12:40
|
IFB Session (Salle 2: Platforms and Services in Bioinformatics) |
|
|
11:00 - 11:20 |
› Ensembl 2020, data growth - Species Quick Release Processing - Marc Chakiachvili |
|
|
11:20 - 11:40 |
› nf-core, a community effort for collaborative, peer-reviewed analysis pipelines - Maxime Garcia |
|
|
11:40 - 12:00 |
› Fostering Open Science and FAIR practices among the IFB infrastructures : the OpenLink and maDMP4LS projects - Julien Seiler / Olivier Collin |
|
|
12:00 - 12:20 |
› What's new on IFB NNCR Cluster(s) ? - Gildas Le Corguillé / Julien Seiler |
|
|
12:20 - 12:40 |
› Bio2M platform: find everything in your RNA-Seq data - Anthony Boureux |
|
|
11:00 - 12:20
|
Statistics & Machine Learning (Salle 3: Statistics and Machine Learning) |
|
|
11:00 - 11:20 |
› Consensus clustering applied to multi-omic disease subtyping - Marie-Galadriel Briere |
|
|
11:20 - 11:40 |
› Bringing ABC inference to the machine learning realm : AbcRanger,an optimized random forests library for ABC - François-David Collin |
|
|
11:40 - 12:00 |
› On the accuracy in high‐dimensional linear models and its application to genomic selection - Charles-Elie Rabier |
|
|
12:00 - 12:20 |
› Towards CNNs Representations for Small Data Classification - Khawla Seddiki |
|
|
12:40 - 14:00
|
Break |
|
|
14:00 - 15:00
|
Keynote: Martin Weigt (Salle 1: Keynote Martin Weigt, Mini-symposium Long Reads) - Protein sequence landscapes: from data-driven models to evolution-guided sequence design |
|
|
15:00 - 15:10
|
Break |
|
|
15:10 - 17:40
|
Mini Symp. Long reads (Salle 1: Keynote Martin Weigt, Mini-symposium Long Reads) - Programme |
|
|
15:10 - 17:40 |
› Long reads in the wide - Jean-Marc Aury, Commissariat à l'Energie Atomique (CEA), Genoscope, Institut de Biologie François-Jacob - Vincent Lacroix, ERABLE, Laboratoire de Biométrie et Biologie Evolutive UMR5558 - Hélène Touzet, 2. Univ. Lille, CNRS, Inserm, CHU Lille, Institut Pasteur de Lille, US 41 - UMS 2014 - PLBS, bilille, F-59000 Lille, France., 3. Univ. Lille, CNRS, Centrale Lille, UMR 9189 - CRIStAL - Centre de Recherche en Informatique Signal et Automatique de Lille, F-59000 Lille, France. |
|
|
15:10 - 17:40
|
Mini Symp. Deep learning (Salle 2: Mini-symposium Deep Learning for Omics) - Programme |
|
|
15:10 - 17:40 |
› Deep learning for omics - Laurent Jacob, Laboratoire de Biométrie et Biologie Evolutive - Raphaël Mourad, Laboratoire de Biologie Cellulaire et Moléculaire du Contrôle de la Prolifération - Vera Pancaldi, Centre de Recherche en Cancérologie de Toulouse - Elissar Nasseredine, CBI, Toulouse - Vincent Rocher, Syndicat interdépartemental pour l'assainissement de l'agglomération parisienne - Mathys Grapotte, Sanofi-Aventis R&D, Institut de Génétique Moléculaire de Montpellier, Laboratoire dÍnformatique de Robotique et de Microélectronique de Montpellier - Arnaud Abreu, Laboratoire des sciences de língénieur, de línformatique et de límagerie |
|
|
15:10 - 17:40
|
Mini Symp. RNA structure (Salle 3: Mini-symposium RNA Structure) - Programme |
|
|
15:10 - 17:40 |
› RNA structure, design and interaction with proteins - Petr Sulc, Rockefeller University - Samuela Pasquali, Cibles Thérapeutiques et conception de médicaments - Fabrice Leclerc, Institut de Biologie Intégrative de la Cellule - Sebastian Will, Laboratoire dínformatique de l\'École polytechnique [Palaiseau] |
|
| Time |
Event |
|
|
09:00 - 10:00
|
Keynote: Johannes Söding (Salle 1: Keynote Johannes Söding) - Methods for the analysis of big data in metagenomics and systems medicine |
|
|
10:00 - 11:00
|
Posters & demos (Salle virtuelle des posters) - 3 |
|
|
11:00 - 12:00
|
Functional Genomics (Salle 2: Functional Genomics) |
|
|
11:00 - 11:20 |
› Automated Inference of Gene Regulatory Networks Using Explicit Regulatory Modules - Clemence Reda |
|
|
11:20 - 11:40 |
› Chromosight: a computer vision based program for pattern recognition in chromosome contact maps - Cyril Matthey-Doret |
|
|
11:40 - 12:00 |
› Reproducibility first: mining CLIP-seq data to understand the Exon Junction Complex - Toni Paternina |
|
|
11:00 - 12:40
|
NGS & Algorithmics (Salle 3: NGS and Algorithmics) |
|
|
11:00 - 11:20 |
› Long-read error correction: a survey and qualitative comparison - Pierre Morisse |
|
|
11:20 - 11:40 |
› UMI-VarCal: a new UMI-based variant caller that efficiently improves low-frequency variant detection in paired-end sequencing NGS libraries - Vincent SATER |
|
|
11:40 - 12:00 |
› Towards a better understanding of the low discovery rate of short-read based insertion variant callers - Wesley Delage |
|
|
12:00 - 12:20 |
› Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms - Nadège Guiglielmoni |
|
|
12:20 - 12:40 |
› REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets - Camille Marchet |
|
|
12:40 - 14:00
|
Break |
|
|
14:00 - 15:00
|
Keynote: Andrea Rau (Salle 1: Keynote Andrea Rau) - Integrative and interactive analyses of multi-omics data |
|
|
15:00 - 15:10
|
Break |
|
|
15:10 - 16:30
|
AG SFBI (Salle 2: SFBI Meeting, GDR-BIM, IFB, JeBIF) |
|
|
16:30 - 16:55
|
GDR-BIM presentation (Salle 2: SFBI Meeting, GDR-BIM, IFB, JeBIF) |
|
|
16:55 - 17:20
|
IFB presentation (Salle 2: SFBI Meeting, GDR-BIM, IFB, JeBIF) |
|
|
17:20 - 17:30
|
JeBIF presentation (Salle 2: SFBI Meeting, GDR-BIM, IFB, JeBIF) |
|
| Time |
Event |
|
|
09:00 - 10:20
|
Computational Medicine (Salle 1: Computational Medicine) |
|
|
09:00 - 09:20 |
› Guidelines for cell-type heterogeneity quantification based on a comparative analysis of reference-free DNA methylation deconvolution software - Clémentine Decamps |
|
|
09:20 - 09:40 |
› Designing a statistical and user friendly application to analyse cell imaging - Rachel Torchet |
|
|
09:40 - 10:00 |
› PRECISE: A domain adaptation approach to transfer predictors of drug response from pre-clinical models to tumors - Soufiane Mourragui |
|
|
10:00 - 10:20 |
› Using the Human Cell Atlas for tracking SARS-CoV-2 entry factors - Christophe Becavin |
|
|
09:00 - 11:00
|
Proteins & Structure (Salle 2: Proteins and Structure) |
|
|
09:00 - 09:20 |
› Local conformations in ordered and intrinsically disordered proteins - Alexandre G. de Brevern |
|
|
09:20 - 09:40 |
› A new mechanism of glucose transport by GluT1 discovered in molecular dynamics simulations - Tatiana Galochkina |
|
|
09:40 - 10:00 |
› ComPotts: Optimal alignment of coevolutionary models for protein sequences - Hugo Talibart |
|
|
10:00 - 10:20 |
› Docking of RNA Hairpin on Protein Using a Fragment-Based Method - Antoine Moniot |
|
|
10:20 - 10:40 |
› Computational methods for RNA complexes secondary structure prediction - Fariza Tahi |
|
|
10:40 - 11:00 |
› InterPro: the protein classification database - Typhaine Paysan-Lafosse |
|
|
11:00 - 11:15
|
Break |
|
|
11:15 - 12:15
|
Keynote: Nuria Lopez-Bigas (Salle 3: Keynote Nuria Lopez-Bigas, Closing) - Computational analysis of cancer genomes |
|
|
12:15 - 12:30
|
Closing (Salle 3: Keynote Nuria Lopez-Bigas, Closing) |
|
|
Loading...