/** * JOBIM Poster Virtual Room. * v1.1 * Author: Valentin Guignon * Date: 29/06/2020 * Copyright (C) The Alliance Bioversity - CIAT * * Requires jQuery >= 1.7 * * Usage: * Include CSS * *
* * * Then include JS. * nb.: other values can be customized in var jobim. See code for details. */ // Declare jobim variable if not declared and init what's needed. if (typeof jobim == 'undefined') { jobim = {}; } if (typeof jobim.poster_show == 'undefined') { jobim.poster_show = 0; } // Poster data. if (typeof jobim.posters == 'undefined') { /******************************************************************************* * POSTER DATA ******************************************************************************/ jobim.posters = [ { number: 4, title: "SAMBA: a flexible automated workflow for the reproducible and standardized processing of eDNA metabarcoding data", keywords: "Metabarcoding, Workflow, eDNA", authors: { "Laure Quintric": true, "Cyril Noël": true, "Laura Leroi": true, "Alexandre Cormier": true, "Patrick Durand": true }, categories: { "FAIR": true }, room: 'poster_4', poster: 'jobim2020_poster_4.pdf', thumbnail: 'jobim2020_poster_4.jpg', display: true }, { number: 5, title: "TimeNexus identifies dynamic pathways from gene expression time-series with temporal networks", keywords: "bioinformatics, transcriptomics, RNA-sequencing, multi-layer network, time course, pathway analysis, cellular responses, Cytoscape", authors: { "Michaël Pierrelée": true, "Laurent Tichit": true, "Bianca Habermann": true, "Fabrice Lopez": true }, categories: { "NGS": true }, room: 'poster_5', poster: 'jobim2020_poster_5.pdf', thumbnail: 'jobim2020_poster_5.jpg', display: true }, { number: 6, title: "Online exploration of transcription profiles along B. subtilis and S. aureus", keywords: "transcriptomic profiles, visualization interface, exploration", authors: { "Sandra Dérozier": true, "Pierre Nicolas": true, "Ulrike Mäder": true, "Cyprien Guérin": true }, categories: { "visualization": true }, room: 'poster_6', poster: 'jobim2020_poster_6.pdf', thumbnail: 'jobim2020_poster_6.jpg', display: true }, { number: 7, title: "Benchmarking joint multi-omics dimensionality reduction approaches for cancer study", keywords: "Matrix factorization, Dimensionality reduction, Data integration, Multi-omics, Cancer, Single-Cell", authors: { "Laura Cantini": true, "Pooya Zakeri": true, "Céline Hernandez": true, "Aurelien Naldi": true, "Denis Thieffry": true, "Elisabeth Remy": true, "Anais Baudot": true }, categories: { "system": true }, room: 'poster_7', poster: 'jobim2020_poster_7.pdf', thumbnail: 'jobim2020_poster_7.jpg', display: true }, { number: 9, title: "Whole metagenome analysis with metagWGS", keywords: "metagenomics, Nextflow pipeline, workflow, whole genome shotgun sequencing data, Illumina short reads, mycotoxins", authors: { "Joanna Fourquet": true, "Céline Noirot": true, "Christophe Klopp": true, "Philippe Pinton": true, "Sylvie Combes": true, "Claire Hoede": true, "Géraldine Pascal": true }, categories: { "metagenomics": true }, room: 'poster_9', poster: 'jobim2020_poster_9.pdf', thumbnail: 'jobim2020_poster_9.jpg', display: true }, { number: 12, title: "RNA-seq Nextflow pipeline", keywords: "RnaSeq, Nextflow, pipeline, parallelization", authors: { "Souhila Amanzougarene": true }, categories: { "FAIR": true }, room: 'poster_12', poster: 'jobim2020_poster_12.pdf', thumbnail: 'jobim2020_poster_12.jpg', display: true }, { number: 13, title: "Exome and CNV Sequencing Analysis pipeline with Nextflow", keywords: "WES, Nextflow, CoDE-seq, Workflow, NGS", authors: { "Alaa Badreddine": true }, categories: { "FAIR": true }, room: 'poster_13', poster: 'jobim2020_poster_13.pdf', thumbnail: 'jobim2020_poster_13.jpg', display: true }, { number: 14, title: "HiC DOC: detecting and comparing genomic compartments", keywords: "hi-c, genomic compartments, bias correction, unsupervised learning, differential analysis", authors: { "Cyril Kurylo": true, "Sylvain Foissac": true, "Matthias Zytnicki": true }, categories: { "NGS": true }, room: 'poster_14', poster: 'jobim2020_poster_14.pdf', thumbnail: 'jobim2020_poster_14.jpg', display: true }, { number: 15, title: "Metage2Metabo: metabolic complementarity applied to genomes of large-scale microbiotas for the identification of keystone species", keywords: "systems biology, microbiota, metagenomics, metabolism, metabolic network, keystone species", authors: { "Arnaud Belcour": true, "Clémence Frioux": true, "Méziane Aite": true, "Anthony Bretaudeau": true, "Falk Hildebrand": true, "Anne Siegel": true }, categories: { "system": true }, room: 'poster_15', poster: 'jobim2020_poster_15.pdf', thumbnail: 'jobim2020_poster_15.jpg', display: true }, { number: 16, title: "MetIDfyR, an open-source R script to decipher small-molecule drug metabolism through high resolution mass spectrometry: Application in doping control", keywords: "High-Resolution Mass Spectrometry, Drug testing, Small molecules, Bioinformatic, Cheminformatic, Metabolism, Data-mining, Untargeted analysis", authors: { "Agnès Barnabé": true, "Vivian Delcourt": true, "Benoît Loup": true, "Patrice Garcia": true, "François André": true, "Benjamin Chabot": true, "Yves Moulard": true, "Marie-Agnès Popot": true, "Ludovic Bailly-Chouriberry": true }, categories: { "FAIR": true }, room: 'poster_16', poster: 'jobim2020_poster_16.pdf', thumbnail: 'jobim2020_poster_16.jpg', display: true }, { number: 19, title: "MEMHDX v2: implementation of new functionalities and redesign of MEMHDX - An interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets.", keywords: "HDX-MS, Statistical modelling, Web application, UX design", authors: { "Stevenn Volant": true, "Rachel Torchet": true, "Véronique Hourdel": true, "Sébastien Brier": true }, categories: { }, room: 'poster_19', poster: 'jobim2020_poster_19.pdf', thumbnail: 'jobim2020_poster_19.jpg', display: true }, { number: 20, title: "In silico characterization of the gene repertoires of immunoglobulins and T cell receptors of the various inbred laboratory strains of Mus musculus", keywords: "immunogenetics, immunoinformatics, inbred mice, characterization", authors: { "Anna Tran": true, "Géraldine Folch": true, "Véronique Giudicelli": true, "Sofia Kossida": true }, categories: { "functional genomics": true }, room: 'poster_20', poster: 'jobim2020_poster_20.pdf', thumbnail: 'jobim2020_poster_20.jpg', display: true }, { number: 21, title: "VCFProcessor: a complete toolbox for improved VCF file analysis", keywords: "VCF, NGS, Variants", authors: { "Thomas Ludwig": true, "Gaelle Marenne": true, "Emmanuelle Génin": true }, categories: { "medicine": true }, room: 'poster_21', poster: 'jobim2020_poster_21.pdf', thumbnail: 'jobim2020_poster_21.jpg', display: true }, { number: 22, title: "The BIBS service (Bioinformatics and Biostatistics) at the Centre International de Recherche en Infectiologie (CIRI)", keywords: "Bioinformatics, Biostatistics, Infectiology, high-throughput sequencing", authors: { "Marie Cariou": true, "Omran Allatif": true, "Antoine Corbin": true }, categories: { "service": true }, room: 'poster_22', poster: 'jobim2020_poster_22.pdf', thumbnail: 'jobim2020_poster_22.jpg', display: true }, { number: 23, title: "A pipeline for quality control of target-enrichment DNA sequencing data", keywords: "NGS, Capture, Quality control, Pipeline", authors: { "Chloé Beaumont": true, "Sophie Gallina": true, "Vincent Castric": true, "Mathieu Genete": true }, categories: { "NGS": true }, room: 'poster_23', poster: 'jobim2020_poster_23.pdf', thumbnail: 'jobim2020_poster_23.jpg', display: true }, { number: 24, title: "Exome sequencing allows detection of relevant pharmacogenetics variants in epileptic patients.", keywords: "Personalized medicine, Predictive medicine, Genomic", authors: { "Simon Verdez": true, "Philippine Garret": true, "Emilie Tisserant": true, "Céline Verstuyft": true, "Antonio Vitobello": true, "Frédéric Tran Mau-Them": true, "Christophe Philippe": true, "Marc Bardou": true, "Maxime Luu": true, "Juliette Albuisson": true, "Abderrahmane Bourredjem": true, "Patrick Callier": true, "Christel Thauvin-Robinet": true, "Laurence Faivre": true, "Yannis Duffourd": true, "Nicolas Picard": true }, categories: { "medicine": true }, room: 'poster_24', poster: 'jobim2020_poster_24.pdf', thumbnail: 'jobim2020_poster_24.jpg', display: true }, { number: 25, title: "Pipeline for ribosome profiling analysis (RiboSeq)", keywords: "Bioinformatics analysis, Pipeline, Ribosome profiling, Quality control, Omics, Standardization", authors: { "Pauline François": true, "Stéphane Demais": true, "Olivier Namy": true }, categories: { "NGS": true }, room: 'poster_25', poster: 'jobim2020_poster_25.pdf', thumbnail: 'jobim2020_poster_25.jpg', display: true }, { number: 26, title: "Automated solutions for big genomic data treatment in the context of the medical diagnosis platform SeqOIA", keywords: "SeqOIA, Spice, GLeaves, Medical diagnosis pipelines, Docker, Snakemake", authors: { "Adrien Legendre": true, "Virginie Saillour": true, "Mario Néou": true, "Nicolas Derive": true, "Camille Barette": true, "Mouhamadou Niang": true, "Jocelyn Brayet": true, "Alban Lermine": true }, categories: { "FAIR": true }, room: 'poster_26', poster: 'jobim2020_poster_26.pdf', thumbnail: 'jobim2020_poster_26.jpg', display: true }, { number: 28, title: "The Migale bioinformatics facility", keywords: "service, training, bacterial genomics, metagenomics, metabarcoding, metatranscriptomics", authors: { "Valentin Loux": true, "Mouhamadou Ba": true, "Damien Berry": true, "Hélène Chiapello": true, "David Christiany": true, "Sandra Dérozier": true, "Olivier Inizan": true, "Mahendra Mariadassou": true, "Véronique Martin": true, "Cédric Midoux": true, "Olivier Rué": true, "Claire Vincent": true, "Valérie Vidal": true, "Sophie Schbath": true }, categories: { "service": true }, room: 'poster_28', poster: 'jobim2020_poster_28.pdf', thumbnail: 'jobim2020_poster_28.jpg', display: true }, { number: 30, title: "SingleCellSignalR: Reconstructing stromal molecular networks from tumor single cell transcriptomes", keywords: "Single cell sequencing, systems biology, ligand-receptor interactions", authors: { "Simon Cabello-Aguilar": true, "Jacques Colinge": true }, categories: { "NGS": true }, room: 'poster_30', poster: '', thumbnail: '', display: false }, { number: 31, title: "Functional inference integrated in the FROGS suite", keywords: "functional inference, FROGS, PICRUsT2, Galaxy, pathway prediction, metabarcoding, metagenomics, markers", authors: { "Moussa Samb": true, "Maria Bernard": true, "Geraldine Pascal": true }, categories: { "metagenomics": true }, room: 'poster_31', poster: 'jobim2020_poster_31.pdf', thumbnail: 'jobim2020_poster_31.jpg', display: true }, { number: 32, title: "Auvergne Bioinformatics platform at UCA Mesocentre", keywords: "Platform, Mesocentre, Galaxy, OMERO", authors: { "Nadia Goué": true, "David Grimbichler": true, "Pierre Peyret": true, "Antoine Mahul": true }, categories: { "service": true }, room: 'poster_32', poster: 'jobim2020_poster_32.pdf', thumbnail: 'jobim2020_poster_32.jpg', display: true }, { number: 33, title: "Sex-specific transcriptomic signatures of Non-Alcoholic SteatoHepatitis (NASH)", keywords: "NASH, Sexual dimorphism, Transcriptomic signatures, Random forest", authors: { "Jimmy Vandel": true, "Julie Dubois-Chevalier": true, "Céline Gheeraert": true, "Bruno Derudas": true, "Violetta Raverdy": true, "Dorothée Thuillier": true, "Luc Van Gaal": true, "Sven Francque": true, "François Pattou": true, "Bart Staels": true, "Jérôme Eeckhoute": true, "Philippe Lefebvre": true }, categories: { "system": true }, room: 'poster_33', poster: 'jobim2020_poster_33.pdf', thumbnail: 'jobim2020_poster_33.jpg', display: true }, { number: 34, title: "PanGBank: exploring GenBank genomes through a resource of pangenome graphs", keywords: "Comparative genomics, pangenome, database, procaryotes", authors: { "Paul Amours": true, "Adelme Bazin": true, "Guillaume Gautreau": true, "Mathieu Dubois": true, "Laura Burlot": true, "Alexandra Calteau": true, "David Vallenet": true }, categories: { "service": true }, room: 'poster_34', poster: 'jobim2020_poster_34.pdf', thumbnail: 'jobim2020_poster_34.jpg', display: true }, { number: 35, title: "Systematic Analysis of Protein Post-translational Modifications at a Proteomic Scale in the pathogenic yeast Candida albicans", keywords: "Post-translational Modifications, Mass spectrometry, Bottom-up proteomics, Protein identification, Candida albicans", authors: { "Thomas Denecker": true, "Nicolas Senecaut": true, "Pierre Poulain": true, "Gaëlle Lelandais": true, "Jean-Michel Camadro": true }, categories: { "NGS": true }, room: 'poster_35', poster: 'jobim2020_poster_35.pdf', thumbnail: 'jobim2020_poster_35.jpg', display: true }, { number: 37, title: "DeepOmics, a Digital Environmental Engineering Platform for meta-omics data", keywords: "data warehouse, meta-omics data, environmental biotechnologies, FAIR data", authors: { "Ariane Bize": true, "Guillaume Perréal": true, "Aurélie Gramusset": true, "Marion Predhumeau": true, "Cédric Midoux": true, "Valentin Loux": true, "Yannick Fayolle": true, "Patrick Dabert": true, "Théodore Bouchez": true, "Nicolas Raidelet": true }, categories: { "service": true }, room: 'poster_37', poster: 'jobim2020_poster_37.pdf', thumbnail: 'jobim2020_poster_37.jpg', display: true }, { number: 38, title: "MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis", keywords: "microbial genomics, metabolic pathways, expert annotation, platform", authors: { "David Vallenet": true, "Alexandra Calteau": true, "Paul Amours": true, "Jérôme Arnoux": true, "Adelme Bazin": true, "Mylène Beuvin": true, "Laura Burlot": true, "Xavier Bussell": true, "Mathieu Dubois": true, "Stéphanie Fouteau": true, "Aurélie Lajus": true, "David Roche": true, "Zoé Rouy": true, "Claudine Médigue": true }, categories: { "service": true }, room: 'poster_38', poster: 'jobim2020_poster_38.pdf', thumbnail: 'jobim2020_poster_38.jpg', display: true }, { number: 39, title: "Testing markers to characterize microbial communities in food ecosystems using metagenomics approach", keywords: "Food ecosystems, Metabarcoding, Fungi, Mock", authors: { "Claire Vincent": true }, categories: { "metagenomics": true }, room: 'poster_39', poster: 'jobim2020_poster_39.pdf', thumbnail: 'jobim2020_poster_39.jpg', display: true }, { number: 40, title: "Extraction of logic gates in metabolics pathways", keywords: "Enzymatic logic gates, biochemical programming, diagnostics, metabolic pathways", authors: { "Patrick Amar": true, "Martin Davy": true, "Liza Felicori": true, "Franck Molina": true }, categories: { "system": true }, room: 'poster_40', poster: 'jobim2020_poster_40.pdf', thumbnail: 'jobim2020_poster_40.jpg', display: true }, { number: 41, title: "Iscard: A tool to detect Copy Number Variation from targeted analysis sequencing", keywords: "NGS, CNV, diagnosis, bam", authors: { "Sacha Schutz": true }, categories: { }, room: 'poster_41', poster: '', thumbnail: '', display: false }, { number: 43, title: "Comparison of plasmid prediction tools to assess the plasmidome of Salmonella enterica", keywords: "plasmids, prediction tools assessment, Salmonella enterica", authors: { "Pauline Barbet": true, "Pierre-Emmanuel Douarre": true, "Arnaud Felten": true, "Nicolas Radomski": true, "Laurent Laloux": true }, categories: { "NGS": true }, room: 'poster_43', poster: 'jobim2020_poster_43.pdf', thumbnail: 'jobim2020_poster_43.jpg', display: true }, { number: 44, title: "Pseudo mitosis during differentiation in Multiciliated cells to drive de novo centriole amplification", keywords: "Chromosome Conformation Capture, Hi-C, ciliogenesis", authors: { "Tran Bich Ngoc Cao": true, "Romain Koszul": true, "Alice Meunier": true, "Cyril Matthey-Doret": true, "Agnes Thierry": true, "Michella Khoury Damaa": true }, categories: { "functional genomics": true }, room: 'poster_44', poster: 'jobim2020_poster_44.pdf', thumbnail: 'jobim2020_poster_44.jpg', display: true }, { number: 45, title: "AOP4EUpest: Combining text mining and graph theory to map pesticides into Adverse Outcome Pathways", keywords: "Pesticides, Adverse Outcome Pathways, Text mining", authors: { "Florence Jornod": true, "Marylène Rugard": true, "Jean-Charles Carvaillo": true, "Xavier Coumoul": true, "Robert Barouki": true, "Karine Audouze": true }, categories: { "service": true }, room: 'poster_45', poster: 'jobim2020_poster_45.pdf', thumbnail: 'jobim2020_poster_45.jpg', display: true }, { number: 46, title: "Shallow shotgun metagenomics workflow validation", keywords: "Bioinformatics, Shotgun metagenomics, Next generation Sequencing, Microbiome", authors: { "Younous Adrouji": true, "Yao Amouzou": true, "Thomas Carton": true, "Sophie Le Fresne-Languille": true, "Morgane Pierre": true, "Erwann Scaon": true, "Pauline Vaissié": true, "Sébastien Leuillet": true }, categories: { "metagenomics": true }, room: 'poster_46', poster: 'jobim2020_poster_46.pdf', thumbnail: 'jobim2020_poster_46.jpg', display: true }, { number: 47, title: "A shotgun metagenomics analysis applied to the ecological engineering of anaerobic microbial communities for the production of hydrogen from Citrus Peel Waste", keywords: "metagenomics, pipeline, ecological engineering", authors: { "Cédric Midoux": true, "Franciele Camargo": true, "Olivier Rué": true, "Mahendra Mariadassou": true, "Valentin Loux": true, "Maria Bernadete Amâncio Varesche": true, "Ariane Bize": true }, categories: { "metagenomics": true }, room: 'poster_47', poster: 'jobim2020_poster_47.pdf', thumbnail: 'jobim2020_poster_47.jpg', display: true }, { number: 48, title: "Comparison of Bacterial Metabarcoding Analysis Pipelines for Species-level Identification", keywords: "NGS, Metabarcoding, Microbiome, Pipeline, Species-level", authors: { "Yao Amouzou": true, "Damien Chauveau": true, "Younous Adrouji": true, "Xuwen Wieneke": true, "Erwann Scaon": true, "Sarita Raengpradub Wheeler": true, "Sébastien Leuillet": true }, categories: { "metagenomics": true }, room: 'poster_48', poster: 'jobim2020_poster_48.pdf', thumbnail: 'jobim2020_poster_48.jpg', display: true }, { number: 49, title: "CGST : New Core-Genome Sequence Typing Tool", keywords: "Multi Locus Sequence Typing, Core-Genome, Sequence Typing", authors: { "Aurélien Birer": true, "Richard Bonnet": true }, categories: { }, room: 'poster_49', poster: '', thumbnail: '', display: false }, { number: 51, title: "A graph-based approach to classify A-minor motifs in RNA structures according to their structural context", keywords: "RNA 3D folding, A-minor motifs, clustering, graph comparison", authors: { "Coline Gianfrotta": true, "Vladimir Reinharz": true, "Olivier Lespinet": true, "Dominique Barth": true, "Alain Denise": true }, categories: { "structure": true }, room: 'poster_51', poster: 'jobim2020_poster_51.pdf', thumbnail: 'jobim2020_poster_51.jpg', display: true }, { number: 52, title: "Chromatin Conformation Capture unveils mechanisms for DNA Double-Strand Breaks repair foci formation", keywords: "Chromatin Conformation Capture, DNA repair, Topologically Associating Domain", authors: { "Coline Arnould": true, "Vincent Rocher": true, "Raphaël Mourad": true }, categories: { "functional genomics": true }, room: 'poster_52', poster: 'jobim2020_poster_52.pdf', thumbnail: 'jobim2020_poster_52.jpg', display: true }, { number: 53, title: "Florilege, a database gathering microbial habitats, phenotypes and uses", keywords: "database, text-mining, habitats, phenotypes, microbiology", authors: { "Sandra Dérozier": true, "Louise Deléger": true, "Estelle Chaix": true, "Reda Mekdad": true, "Mouhamadou Ba": true, "Robert Bossy": true, "Delphine Sicard": true, "Valentin Loux": true, "Hélène Falentin": true, "Claire Nédellec": true }, categories: { "service": true }, room: 'poster_53', poster: 'jobim2020_poster_53.pdf', thumbnail: 'jobim2020_poster_53.jpg', display: true }, { number: 54, title: "Benchmarking the accuracy of whole-genome sequencing in saliva through pseudo-replication", keywords: "", authors: { "Anthony Herzig": true, "Lourdes Velo-suárez": true, "Gaëlle Le Folgoc": true, "Anne Boland": true, "Hélène Blanché": true, "Robert Olaso": true, "Liana Le Roux": true, "Christelle Delmas": true, "Marcel Goldberg": true, "Marie Zins": true, "Jean-François Deleuze": true, "Emmanuelle Génin": true }, categories: { }, room: 'poster_54', poster: 'jobim2020_poster_54.pdf', thumbnail: 'jobim2020_poster_54.jpg', display: true }, { number: 55, title: "Where are the dual C/E domains in NRPS originated from?", keywords: "Bacteria, lipopeptides, NonRibosomal peptide Synthases, Phylogeny", authors: { "Clémentine Campart": true, "Loïc Couderc": true, "Matthieu Duban": true, "Valérie Leclere": true, "Maude Pupin": true }, categories: { }, room: 'poster_55', poster: '', thumbnail: '', display: false }, { number: 56, title: "COBRA: an automated RNA-seq data analysis pipeline.", keywords: "RNAseq, pipeline, snakemake", authors: { "Hatira Skander": true, "Frederic Grandjean": true, "Bouziane Moumen": true }, categories: { }, room: 'poster_56', poster: '', thumbnail: '', display: false }, { number: 57, title: "Gut microbiota and clinical efficacy of immunotherapy in renal cell carcinoma", keywords: "Renal cell carcinoma, cancer, gut microbiota, richness, species, abundance, responder, non responder, immune checkpoint inhibitors, metagenomic species, bacteria, treatment", authors: { "Laurie Alla": true, "Lisa Derosa": true, "Valerio Iebba": true, "Emmanuelle Le Chatelier": true, "Laurence Zitvogel": true }, categories: { "metagenomics": true }, room: 'poster_57', poster: 'jobim2020_poster_57.pdf', thumbnail: 'jobim2020_poster_57.jpg', display: true }, { number: 58, title: "Unveiling cancer cell and tumor microenvironment interactions at the single cell level in colorectal-cancer liver metastases", keywords: "Single Cell RNAseq, tumor heterogeneity, microenvironment, cancer associated fibroblasts", authors: { "Ambre Giguelay": true, "Andrei Turtoi": true, "Jacques Colinge": true, "Ander Churruca Schuind": true, "Barbara Chiavarina": true, "Simon Cabello-Aguilar": true, "Pierre-Emmanuel Colombo": true, "Lakhdar Khellaf": true, "Didier Pourquier": true }, categories: { }, room: 'poster_58', poster: '', thumbnail: '', display: false }, { number: 59, title: "Detection of fusion genes for cancer diagnostic: good practices from the SeqOIA project", keywords: "Fusion genes, Genomics, Cancer, Personalized medicine, Benchmark", authors: { "Tom Gutman": true, "Mario Néou": true, "Nicolas Servant": true, "Alban Lermine": true }, categories: { "medicine": true }, room: 'poster_59', poster: 'jobim2020_poster_59.pdf', thumbnail: 'jobim2020_poster_59.jpg', display: true }, { number: 60, title: "PanFam: a pangenomic work ow for the iterative construction of gene families on thousands of genome", keywords: "Pangenomics, Comparative genomics, Gene families, Homology", authors: { "Jérôme Arnoux": true, "Mylène Beuvin": true, "Adelme Bazin": true, "Alexandra Calteau": true, "Vallenet David": true }, categories: { "functional genomics": true }, room: 'poster_60', poster: 'jobim2020_poster_60.pdf', thumbnail: 'jobim2020_poster_60.jpg', display: true }, { number: 62, title: "Sequencing, Assembly and Annotation of 40 Brown Algae Genomes", keywords: "Comparative genomics, Oxford Nanopore Technology, Gene prediction", authors: { "Nachida Tadrent": true, "Corinne Cruaud": true, "Arnaud Couloux": true, "Corinne Da Silva": true, "Benjamin Noel": true, "Olivier Godfroy": true, "Zofia Nehr": true, "Erwan Corre": true, "Susana M. Coelho": true, "France Denoeud": true, "Patrick Wincker": true, "Jean-Marc Aury": true, "Mark J. Cock": true }, categories: { "evolution": true }, room: 'poster_62', poster: 'jobim2020_poster_62.pdf', thumbnail: 'jobim2020_poster_62.jpg', display: true }, { number: 63, title: "Single cell transcriptome analyses of microglia inflammatory response during development", keywords: "single cell, neuroinflammation, microglia, transcriptome, indrop, targeted single cell, workflow", authors: { "Adrien Dufour": true, "Sophie Foulon": true, "Amazigh Mokhtari": true, "Juliette Van Steenwinckel": true, "Pierre Gressens": true, "Philippe Nghe": true, "Andrée Delahaye-Duriez": true }, categories: { }, room: 'poster_63', poster: 'jobim2020_poster_63.pdf', thumbnail: 'jobim2020_poster_63.jpg', display: true }, { number: 64, title: "RGCCA Shiny, a graphical package for multimodal omics data analysis: application to Parkinson’s disease", keywords: "Canonical Correlation Analysis, Multidimensional analysis, Integration, Shiny, omics, biomarkers", authors: { "Etienne Camenen": true, "Caroline 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'jobim2020_poster_69.jpg', display: true }, { number: 71, title: "Transcriptomics and epigenetics integration analysis to identify co-expressed gene networks as markers of childhood trauma-related major depressive disorder.", keywords: "Childhood Trauma, Major Depressive Disorder, miRNA, Multiomics, WGCNA", authors: { "Amazigh Mokhtari": true, "El Chérif Ibrahim": true, "Raoul Belzeaux": true, "Bruno Etain": true, "Cynthia Marie-Claire": true, "Ipek Yalcin": true, "Pierre-Eric Lutz": true, "Andrée Delahaye-Duriez": true }, categories: { }, room: 'poster_71', poster: '', thumbnail: '', display: false }, { number: 72, title: "New strategy of protein structure prediction: Local fold recognition and Deep learning", keywords: "", authors: { "Gabriel Cretin": true, "Charlotte Périn": true, "Madeleine De Sousa Violante": true, "Alexandre G. de Brevern": true, "Tatiana Galochkina": true, "Jean-Christophe Gelly": true }, categories: { }, room: 'poster_72', poster: 'jobim2020_poster_72.pdf', thumbnail: 'jobim2020_poster_72.jpg', display: true }, { number: 73, title: "PYTHIA: Deep Learning Approach For Local Protein Conformation Prediction", keywords: "Protein, Structure, Prediction, Deep-learning", authors: { "Gabriel Cretin": true, "Tatiana Galochkina": true, "Charlotte Périn": true, "Alexandre G. de Brevern": true, "Jean-Christophe Gelly": true }, categories: { "structure": true }, room: 'poster_73', poster: 'jobim2020_poster_73.pdf', thumbnail: 'jobim2020_poster_73.jpg', display: true }, { number: 74, title: "Controllability in Multiplex Biological Networks for Disease Identification", keywords: "", authors: { "Ali Reza Khanteymoori": true, "Soudeh Behrouzinia": true }, categories: { }, room: 'poster_74', poster: 'jobim2020_poster_74.pdf', thumbnail: 'jobim2020_poster_74.jpg', display: true }, { number: 75, title: "Industrial NGS analysis processes from sequencing to variant interpretation on MOABI platform", keywords: "", authors: { "Aminata Ndiaye": true, "Jocelyn 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77, title: "Bioinformatc evaluation of the impact of base quality score recalibration (BQSR) over variant discovery from NGS data", keywords: "BQSR, Pipeline, GATK, Somatic, Germline, Variant calling, Benchmarking, NGS, GIAB, Optimisation, Quality score", authors: { "Cyril Fournier": true, "Yannis Duffourd": true, "Mary Callanan": true }, categories: { "medicine": true }, room: 'poster_77', poster: 'jobim2020_poster_77.pdf', thumbnail: 'jobim2020_poster_77.jpg', display: true }, { number: 78, title: "New insights into cow holobiont in relation to health", keywords: "metabarcoding, diversity analysis, cow microbiota", authors: { "Mahendra Mariadassou": true, "Sophie Schbath": true, "Sergine Even": true }, categories: { "metagenomics": true }, room: 'poster_78', poster: 'jobim2020_poster_78.pdf', thumbnail: 'jobim2020_poster_78.jpg', display: true }, { number: 79, title: "Multi-omics integrative approaches for biological meaningful signatures", keywords: "multi-omics, multiple omics 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'poster_81', poster: 'jobim2020_poster_81.pdf', thumbnail: 'jobim2020_poster_81.jpg', display: true }, { number: 83, title: "MetExplore: Solutions to access, extend and exploit knowledge of metabolism", keywords: "Metabolic Network, Metabolic Pathway, Database, Visualization, Metabolomics", authors: { "Florence Vinson": true, "Ludovic Cottret": true, "Maxime Chazalviel": true, "Amina Taoui": true, "Nathalie Poupin": true, "Clément Frainay": true, "Fabien Jourdan": true }, categories: { }, room: 'poster_83', poster: '', thumbnail: '', display: false }, { number: 84, title: "ESKRIM: accurate reference-free comparison of microbial richness in shotgun metagenomic samples by k-mers counting", keywords: "shotgun metagenomics, microbial richness, sequence analysis, reference-free algorithm", authors: { "Florian Plaza Oñate": true, "Emmanuelle Le Chatelier": true }, categories: { "metagenomics": true }, room: 'poster_84', poster: 'jobim2020_poster_84.pdf', thumbnail: 'jobim2020_poster_84.jpg', 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true, "Alexis Dereeper": true, "Jean-François Dufayard": true, "Olivier Garsmeur": true, "Anestis Gkanogiannis": true, "Valentin Guignon": true, "Chantal Hamelin": true, "David Lopez": true, "Nicolas Oubda": true, "Guillaume Martin": true, "Sébastien Ravel": true, "Manuel Ruiz": true, "Marilyne Summo": true, "Coline Thomas": true, "Christine Tranchant-Dubreuil": true, "Mathieu Rouard": true }, categories: { "service": true }, room: 'poster_112', poster: 'jobim2020_poster_112.pdf', thumbnail: 'jobim2020_poster_112.jpg', display: true }, { number: 113, title: "Proteomics guided detection of abnormal NGS genomes and proteomes", keywords: "Metaproteomics, Tandem mass spectrometry, Bioinformatic pipelines, Database quality, Signature", authors: { "Karen Culotta": true, "Virginie Jouffret": true, "Jean Armengaud": true, "Olivier Pible": true }, categories: { }, room: 'poster_113', poster: '', thumbnail: '', display: false }, { number: 114, title: "Large-scale transcriptomics to dissect two years of life of a fungal phytopathogen in interaction(s) with its host plant", keywords: "Phytopathogenic fungal, time-course transcriptomic data, virulence expression waves, epigenetic regulation", authors: { "Elise Gay": true, "Marie-Hélène Balesdent": true, "Jessica L. Soyer": true, "Nicolas Lapalu": true, "Thierry Rouxel": true }, categories: { }, room: 'poster_114', poster: '', thumbnail: '', display: false }, { number: 115, title: "SysMics Integrative Research Cluster: Toward Systems Medicine based on Genomics", keywords: "genomics, bioinformatics, systems medicine, sequencing, whole genome, single cell, microbiota, metagenomics, epigenetics", authors: { "Audrey Bihouée": true, "Stéphanie Bonnaud": true, "Jérémie Bourdon": true, "Laurent David": true, "Stéphane Minvielle": true, "Michel Neunlist": true, "Patricia Parnet": true, "Pierre-Antoine Gourraud": true, "Antoine Magnan": true, "Françoise Le Vacon": true, "Richard Redon": true }, categories: { "functional genomics": true }, room: 'poster_115', poster: 'jobim2020_poster_115.pdf', thumbnail: 'jobim2020_poster_115.jpg', display: true }, { number: 116, title: "Functional networks of co-expressed genes to explore iron homeostasis processes in the pathogenic yeast", keywords: "Functional genomics, Yeasts, Transcriptomics, Networks, Iron homeostasis", authors: { "Thomas Denecker": true, "Youfang Zhou Li": true, "Cécile Fairhead": true, "Karine Budin": true, "Jean-Michel Camadro": true, "Monique Bolotin-Fukuhara": true, "Adela Angoulvant": true, "Gaëlle Lelandais": true }, categories: { "functional genomics": true }, room: 'poster_116', poster: 'jobim2020_poster_116.pdf', thumbnail: 'jobim2020_poster_116.jpg', display: true }, { number: 117, title: "Reconstruction and comparison of brown algal metabolic networks for identification of specific genes", keywords: "Metabolic networks, genome project, brown seaweeds", authors: { "Alexandre Lambard": true, "Jeanne Got": true, "Anne Siegel": true, "Gabriel Markov": true, "Erwan Corre": true }, categories: { "system": true }, room: 'poster_117', poster: 'jobim2020_poster_117.pdf', thumbnail: 'jobim2020_poster_117.jpg', display: true }, { number: 118, title: "Examples of bioanalysis activities on the ABiMS (Analysis and Bioinformatic for Marine Science) platform", keywords: "Metagenomes, MAGs, Genomes assembly, Long reads, HI-C", authors: { "Nahéma Hecht": true, "Thomas Enjalbert": true, "Simon Dittami Dittami": true, "Olivier Godfroy": true, "Agnieska Lipinska": true, "François Thomas": true, "Erwan Corre": true }, categories: { }, room: 'poster_118', poster: '', thumbnail: '', display: false }, { number: 119, title: "Inferring ligand-receptor interactions from single-cell and bulk transcriptomic data", keywords: "", authors: { "Simon Cabello-Aguilar": true, "Melissa Alame": true, "Jacques Colinge": true }, categories: { }, room: 'poster_119', poster: 'jobim2020_poster_119.pdf', thumbnail: 'jobim2020_poster_119.jpg', display: true }, { number: 120, title: "Semi-automated noise removal tool for single-cell mass cytometry data", keywords: "mass cytometry, single cell, preprocessing", authors: { "Maria-Fernanda Senosain": true, "Pierre P. Massion": true }, categories: { }, room: 'poster_120', poster: 'jobim2020_poster_120.pdf', thumbnail: 'jobim2020_poster_120.jpg', display: true }, { number: 123, title: "ToulligQC 2: a nicer and faster quality control software for Oxford Nanopore sequencing data", keywords: "QC tool, Oxford Nanopore Technologies, sequencing devices, analysis", authors: { "Karine Dias": true, "Laurent Jourdren": true, "Corinne Blugeon": true, "Charlotte Berthelier": true, "Médine Benchouaia": true }, categories: { }, room: 'poster_123', poster: '', thumbnail: '', display: false }, { number: 125, title: "Axiomatization and Intgration of DESCRIPTION’s domaine in IMGT-ONTOLOGY : Construction of a Knowledge Graph in Immunogenetics", keywords: "immunogenetics, immunoinformatics, ontologies, knowledge graphs, machine learning", authors: { "Gaoussou Sanou": true, "Patrice Duroux": true, "Véronique Giudicelli": true, "Konstantin Todorov": true, "Sofia Kossida": true }, categories: { "service": true }, room: 'poster_125', poster: 'jobim2020_poster_125.pdf', thumbnail: 'jobim2020_poster_125.jpg', display: true }, { number: 126, title: "A Shiny application for RNA-seq data analysis and interpretation", keywords: "RNA-seq data analysis, Shiny application, User-friendly graphical interface", authors: { "Justine Guégan": true, "Beáta György": true, "Mathilde Bertrand": true, "Thomas Gareau": true, "Ivan Moszer": true }, categories: { "visualization": true }, room: 'poster_126', poster: 'jobim2020_poster_126.pdf', thumbnail: 'jobim2020_poster_126.jpg', display: true }, { number: 127, title: "From reads to chromosomes: What is the optimal path?", keywords: "de novo assembly, Oxford Nanopore, Pacific Bioscience, 10x Chromium, Hi-C, Bionano optical mapping, chromosome level assemblies", authors: { "Andreea Dréau": true, "Clément Birbes": true, "Camille Eche": true, "Carole Iampietro": true, "Cécile Grohs": true, "Didier Boichard": true, "Cécile Donnadieu": true, "Christine Gaspin": true, "Denis Milan": true, "Christophe Klopp": true, "Matthias Zytnicki": true }, categories: { "NGS": true }, room: 'poster_127', poster: 'jobim2020_poster_127.pdf', thumbnail: 'jobim2020_poster_127.jpg', display: true }, { number: 128, title: "Comparison of mean strains in metagenomic samples using variation graphs", keywords: "metagenomics, strains, variation graphs", authors: { "Kévin Da Silva": true, "Nicolas Pons": true, "Magali Berland": true, "Florian Plaza Oñate": true, "Pierre Peterlongo": true }, categories: { }, room: 'poster_128', poster: '', thumbnail: '', display: false }, { number: 129, title: "Mobilome conservation among Drosophila paralogs", keywords: "Transposable elements, Drosophila, Evolution biology, Mobilome, Duplicated genes", authors: { "Gabrielle Pozo": true, "Carène Rizzon": true, "Emmanuelle Lerat": true }, categories: { "evolution": true }, room: 'poster_129', poster: 'jobim2020_poster_129.pdf', thumbnail: 'jobim2020_poster_129.jpg', display: true }, { number: 130, title: "Convergent stepwise recombination suppression in mating-type chromosomes of anther-smut fungi", keywords: "Comparative genomics, Evolution, Non-recombining regions, Microbotryum", authors: { "Marine Duhamel": true, "Ricardo C. Rodriguez de la Vega": true, "Fantin Carpentier": true, "Tatiana Giraud": true }, categories: { "evolution": true }, room: 'poster_130', poster: 'jobim2020_poster_130.pdf', thumbnail: 'jobim2020_poster_130.jpg', display: true }, { number: 131, title: "Benchmarking of Minion long read assembly tools to produce a high-quality genome of ​Pseudogynoascus destructans​, a pathogen fungus with a high proportion of repetitive elements.", keywords: "Long-reads, Assembly, Repetitive elements, Pseudogymnoascus destructans", authors: { "Matthieu Fournel​": true, "Sèverine Bérard": true, "Nicola Fischer": true, "Marie-Ka Tilak": true, "Anna-Sophie Fiston-Lavier​": true, "Sébastien J Puechmaille​": true }, categories: { "NGS": true }, room: 'poster_131', poster: 'jobim2020_poster_131.pdf', thumbnail: 'jobim2020_poster_131.jpg', display: true }, { number: 132, title: "Artificial intelligence approach for predicting variations in low-coverage NGS sequences", keywords: "artificial intelligence, pangenome, graph genome, graph variations, rice", authors: { "Nguyet Dang": true, "François Sabot": true }, categories: { }, room: 'poster_132', poster: 'jobim2020_poster_132.pdf', thumbnail: 'jobim2020_poster_132.jpg', display: true }, { number: 133, title: "NG-AR2T, an epidemiological analysis pipeline for Neisseria gonorrhoeae sequenced isolates", keywords: "Neisseria gonorrhoeae, genomic analysis, epidemiological study, whole genome sequencing, antimicrobial resistance, phylogeny", authors: { "Manel Merimeche": true, "Thibaut Poncin": true, "François Caméléna": true, "Mary Mainardis": true, "Aymeric Braille": true, "Alban Lermine": true, "Béatrice BerÇot": true }, categories: { "NGS": true }, room: 'poster_133', poster: 'jobim2020_poster_133.pdf', thumbnail: 'jobim2020_poster_133.jpg', display: true }, { number: 134, title: "MTG-Link: filling gaps in draft genome assemblies with linked read data", keywords: "gap-filling, linked read data, MindTheGap, read subsampling, de Bruijn graph", authors: { "Anne Guichard": true, "Fabrice Legeai": true, "Denis Tagu": true, "Claire Lemaitre": true, "Arthur Le Bars": true, "Paul Yann Jay": true, "Mathieu Joron": true }, categories: { "NGS": true }, room: 'poster_134', poster: 'jobim2020_poster_134.pdf', thumbnail: 'jobim2020_poster_134.jpg', display: true }, { number: 136, title: "A Galaxy interface to facilitate multi-block analysis", keywords: "integrative biology, data integration, sparse PLS-DA, Galaxy interface", authors: { "Pierre Pericard": true, "Maxime Brunin": true, "Guillemette Marot": true }, categories: { "stat": true }, room: 'poster_136', poster: 'jobim2020_poster_136.pdf', thumbnail: 'jobim2020_poster_136.jpg', display: true }, { number: 137, title: "Predicting transcription initiation at microsatellites using deep learning", keywords: "Transcription, Microsatellites, STR, Deep Learning, CNN, Convolution Neural Network", authors: { "Mathys Grapotte": true, "Chloé Bessiere": true, "Manu Saraswat": true, "Fantom Consortium": true, "Laurent Bréhélin": true, "Charles-Henri Lecellier": true }, categories: { "functional genomics": true }, room: 'poster_137', poster: 'jobim2020_poster_137.pdf', thumbnail: 'jobim2020_poster_137.jpg', display: true }, { number: 140, title: "Gene expression predictions using deep learning approach", keywords: "deep learning, genomics, gene expression, canine model", authors: { "Camille Kergal": true, "Catherine André": true, "Marie-Dominique Galibert": true, "Thomas Derrien": true, "Christophe Hitte": true }, categories: { "stat": true }, room: 'poster_140', poster: 'jobim2020_poster_140.pdf', thumbnail: 'jobim2020_poster_140.jpg', display: true }, { number: 141, title: "A bioinformatics pipeline for the characterization of small RNAs involved in the plant-root knot nematodes interaction.", keywords: "siRNAs, microRNAs, bioinformatic prediction, Small noncoding RNAs", authors: { "Martine Da Rocha": true, "Clemence Medina": true, "Laetitia Perfus-Barbeoch": true, "Bruno Favery": true, "Stéphanie Jaubert-Possamai": true }, categories: { "functional genomics": true }, room: 'poster_141', poster: 'jobim2020_poster_141.pdf', thumbnail: 'jobim2020_poster_141.jpg', display: true }, { number: 143, title: "Improving microbial taxonomic profiling with long read technologies", keywords: "taxonomic profiling, long read technologies, taxonomic resolution", authors: { "Jean Mainguy": true, "Adrien Castinel": true, "Olivier Bouchez": true, "Sylvie Combes": true, "Carole Iampietro": true, "Christine Gaspin": true, "Denis Milan": true, "Cécile Donnadieu": true, "Claire Hoede": true, "Géraldine Pascal": true }, categories: { "metagenomics": true }, room: 'poster_143', poster: 'jobim2020_poster_143.pdf', thumbnail: 'jobim2020_poster_143.jpg', display: true }, { number: 144, title: "Evolution of ohnologous chromosomes following Whole Genome Duplication in apple", keywords: "Quantitative Trait Loci, Whole Genome Duplication, Synteny Blocks", authors: { "Tanguy Lallemand": true, "Sébastien Aubourg": true, "Gilles Hunault": true, "Jean-Marc Celton": true, "Claudine Landès": true }, categories: { "evolution": true }, room: 'poster_144', poster: 'jobim2020_poster_144.pdf', thumbnail: 'jobim2020_poster_144.jpg', display: true }, { number: 145, title: "Protein multiple alignments: sequence-based versus structure-based programs.", keywords: "Multiple Alignment Programs, Sequence Alignment, Structure Alignment", authors: { "Mathilde Carpentier": true, "Jacques Chomilier": true }, categories: { }, room: 'poster_145', poster: '', thumbnail: '', display: false }, { number: 147, title: "GeT, Sequencing Core Facility for all", keywords: "Sequencing, Genomics, Core facility, Traceability", authors: { "Claire Kuchly": true, "Cécile Donnadieu": true, "Denis Milan": true, "Marie-Ange Teste": true, "Yannick Lippi": true, "Frederic Martins": true, "Emeline Lhuillier": true }, categories: { "NGS": true }, room: 'poster_147', poster: 'jobim2020_poster_147.pdf', thumbnail: 'jobim2020_poster_147.jpg', display: true }, { number: 148, title: "Efficiency and strategies of model training to call methylation from Oxford Nanopore reads", keywords: "Oxford Nanopore Technologies, Epigenetics, Methylation calling, Model training", authors: { "Paul Terzian": true, "Rémy-Felix Serre": true, "Clément Birbes": true, "Christine Gaspin": true, "Denis Milan": true, "Cécile Donnadieu": true, "Carole Iampietro": true, "Christophe Klopp": true, "Céline Vandecasteele": true }, categories: { }, room: 'poster_148', poster: '', thumbnail: '', display: false }, { number: 149, title: "Bacterial strains identification using Oxford Nanopore sequencing", keywords: "Bacterial strains identification, Bloom filter tree, Indel seeds, Long reads, MinION, Oxford Nanopore sequencing, Spaced seeds", authors: { "Grégoire Siekaniec": true, "Emeline Roux": true, "Eric Guedon": true, "Jacques Nicolas": true }, categories: { "NGS": true }, room: 'poster_149', poster: 'jobim2020_poster_149.pdf', thumbnail: 'jobim2020_poster_149.jpg', display: true }, { number: 150, title: "GLeaves : Bringing clinical variant interpretation to genome scale", keywords: "Variant, Genomics, Interpretation, Clinical, PFMG2025, Software, Collaboration, Diagnosis, Rare diseases, Cancer", authors: { "Nicolas Derive": true, "Laurent Frobert": true, "Mouahmadou Niang": true, "Virginie Saillour": true, "Mario Néou": true, "Adrien Legendre": true, "Vivien Deshaies": true, "Camille Barette": true, "Alban Lermine": true }, categories: { "visualization": true }, room: 'poster_150', poster: 'jobim2020_poster_150.pdf', thumbnail: 'jobim2020_poster_150.jpg', display: true }, { number: 151, title: "CSTB : a web service to identify CRISPR sequences to differentially target bacteria", keywords: "web service, crispr, bacteria, differential targetting", authors: { "Cécile Hilpert": true, "Sophie Lematre": true, "Audrey Reuter": true, "Sarah Bigot": true, "Christian Lesterlin": true, "Guillaume Launay": true }, categories: { "service": true }, room: 'poster_151', poster: 'jobim2020_poster_151.pdf', thumbnail: 'jobim2020_poster_151.jpg', display: true }, { number: 152, title: "Genome-Scale Metabolic Networks of Penicillium chrysogenum: evolution, combination and new reconstruction", keywords: "Genome-scale metabolic network (GSMN), Data integration, Penicillium chrysogenum", authors: { "Delphine Nègre": true, "Abdelhalim Larhlimi": true, "Emmeline Watier": true, "Jérémie Bourdon": true, "Etienne Lorteau": true, "Anne Siegel": true, "Jacques Nicolas": true, "Laurence Meslet-Cladiere": true, "Catherine Roullier": true, "Emmanuel Gentil": true, "Nicolas Ruiz": true, "Olivier Grovel": true, "Yves-François Pouchus": true, "Samuel Bertrand": true }, categories: { "system": true }, room: 'poster_152', poster: 'jobim2020_poster_152.pdf', thumbnail: 'jobim2020_poster_152.jpg', display: true }, { number: 153, title: "Use of small RNA sequencing to shed light on host-parasite interactions during infection by the microsporidian Anncaliia algerae", keywords: "Anncaliia algerae, Host-parasite interactions, Microsporidia, Transcriptomics", authors: { "Cédric Bicep": true, "Ivan Wawrzyniak": true, "Valérie Polonais": true, "Fréderic Delbac": true, "Jean-Melaine Sion": true, "Éric Peyretaillade": true }, categories: { "functional genomics": true }, room: 'poster_153', poster: '', thumbnail: '', display: false }, { number: 155, title: "Facilitating the connection between local datasets and neXtProt with Semantic Web technologies and AskOmics", keywords: "Semantic Web, Federated query, neXtProt, User-friendly, Web software", authors: { "Xavier Garnier": true, "Anthony Bretaudeau": true, "Alain Gateau": true, "Lydie Lane": true, "Fabrice Legeai": true, "Pierre-André Michel": true, "Anne Siegel": true, "Olivier Dameron": true }, categories: { "service": true }, room: 'poster_155', poster: 'jobim2020_poster_155.pdf', thumbnail: 'jobim2020_poster_155.jpg', display: true }, { number: 156, title: "Could genomic approach discriminate between Environmental and Pathogenic non-epidemic Vibrio cholerae?", keywords: "Phylogeny, Comparative genomics, Emergent pathogen, Foodborne pathogen", authors: { "Slim El Khiari": true }, categories: { "evolution": true }, room: 'poster_156', poster: 'jobim2020_poster_156.pdf', thumbnail: 'jobim2020_poster_156.jpg', display: true }, { number: 157, title: "Galaxy Genome Annotation implementation in the European Open Science Cloud", keywords: "EOSC Life, Galaxy Genome Annotation, Workflow", authors: { "Romain Dallet": true, "Loraine Brillet-Guéguen": true, "Gildas L​e​ C​orguillé": true, "Gianluca De Moro": true, "Cymon J. Cox": true, "Erwan Corre": true }, categories: { "service": true }, room: 'poster_157', poster: 'jobim2020_poster_157.pdf', thumbnail: 'jobim2020_poster_157.jpg', display: true }, { number: 158, title: "An integrative pipeline for region-based rare variant association studies : quality control, qualifying variant selection and association tests", keywords: "Region-based association test, Rare variant, Sequencing data quality control, Multiple-category phenotypes.", authors: { "Gaelle Marenne": true, "Thomas Ludwig": true, "Ozvan Bocher": true, "Emmanuelle Génin": true }, categories: { "FAIR": true }, room: 'poster_158', poster: 'jobim2020_poster_158.pdf', thumbnail: 'jobim2020_poster_158.jpg', display: true }, { number: 160, title: "Deployment of Genome Databases for Brown Algae Using Galaxy Genome Annotation", keywords: "brown algae, genomic and transcriptomic data, Galaxy Genome Annotation, web portal, GMOD suite, Galaxy, Docker", authors: { "Loraine Brillet-Guéguen": true, "Arthur Le Bars": true, "Delphine Nègre": true, "Anthony Bretaudeau": true, "J. Mark Cock": true, "Susana M. Coelho": true, "Erwan Corre": true }, categories: { "service": true }, room: 'poster_160', poster: 'jobim2020_poster_160.pdf', thumbnail: 'jobim2020_poster_160.jpg', display: true }, { number: 161, title: "Plasma: e-learning platform for massive data analysis", keywords: "Jupyter, notebook, data analysis, genomics, teaching, e-learning, active learning", authors: { "Jérémy Tuloup": true, "Claire Vandiedonck": true, "Pierre Poulain": true, "Sandrine Caburet": true }, categories: { "FAIR": true }, room: 'poster_161', poster: 'jobim2020_poster_161.pdf', thumbnail: 'jobim2020_poster_161.jpg', display: true }, { number: 162, title: "Systems Immunology approach using tranSMART: challenges and solutions in integrating new type of data", keywords: "system immunology, database, data integration", authors: { "Aurelien Beliard": true, "Encarnita Mariotti-Ferrandiz": true }, categories: { }, room: 'poster_162', poster: 'jobim2020_poster_162.pdf', thumbnail: 'jobim2020_poster_162.jpg', display: true }, { number: 163, title: "What are the functions of upstream open reading frames (uORFs) in dendritic cells?", keywords: "upstream open reading frame (uORFs), protein-protein interaction (PPI) network, network inference, sORF-encoded polypeptides (sPEPs), translation, dendritic cells (DCs)", authors: { "Sébastien A. Choteau": true, "Audrey Wagner": true, "Andreas Zanzoni": true, "Lionel Spinelli": true, "Philippe Pierre": true, "Christine Brun": true }, categories: { "structure": true }, room: 'poster_163', poster: 'jobim2020_poster_163.pdf', thumbnail: 'jobim2020_poster_163.jpg', display: true }, { number: 164, title: "Long-term dynamics of protist paleocommunities in a coastal marine ecosystem (Bay of Brest, NW France) revealed by DNA metabarcoding", keywords: "Ancient DNA, Metabarcoding, Protist, NGS, Amplicon Sequence Variant, Paleoecology", authors: { "Pierre Cuzin": true, "Malwenn Lassudrie Duchesne": true, "Laure Quintric": true, "Cyril Noël": true, "Patrick Durand": true, "Raffaele Siano": true }, categories: { "metagenomics": true }, room: 'poster_164', poster: 'jobim2020_poster_164.pdf', thumbnail: 'jobim2020_poster_164.jpg', display: true }, { number: 166, title: "Extraction of association implication rules from knowledge on plants with pesticidal and antibiotic effect classified by FCA within the One-Health initiative", keywords: "One-Health initiative, association implication rules, FCA, plants with pesticidal and antibiotic effect", authors: { "Lina Mahrach": true, "Alain Gutierrez": true, "Marianne Huchard": true, "Priscilla Keip": true, "Pierre Silvie": true, "Pierre Martin": true }, categories: { "stat": true }, room: 'poster_166', poster: 'jobim2020_poster_166.pdf', thumbnail: 'jobim2020_poster_166.jpg', display: true }, { number: 167, title: "CD-hit-medoid: Optimization of a nucleotide sequence-clustering tool", keywords: "cd-hit-est, catalog of genes, representative, redundancy, iteration, medoid", authors: { "Oscar Gitton-Quent": true, "Florian Plaza Oñate": true, "Emmanuelle Le Chatelier": true, "Nicolas Pons": true, "Mathieu Almeida": true }, categories: { }, room: 'poster_167', poster: 'jobim2020_poster_167.pdf', thumbnail: 'jobim2020_poster_167.jpg', display: true }, { number: 168, title: "South Green Bioinformatic Resources For Tropical and Mediterranean Crops", keywords: "Databases, Workflows, Plants, Platform", authors: { "Mathieu Rouard": true, "Stéphanie Bocs": true, "Catherine Breton": true, "Aurore Comte": true, "Fredéric De Lamotte": true, "Alexis Dereeper": true, "Gaëtan Droc": true, "Jean-François Dufayard": true, "Valentin Guignon": true, "Chantal Hamelin": true, "Pierre Larmande": true, "David Lopez": true, "Frédéric Mahe": true, "Guillaume Martin": true, "Julie Orjuela-Bouniol": true, "Bertrand Pitollat": true, "Sébastien Ravel": true, "Manuel Ruiz": true, "François Sabot": true, "Gautier Sarah": true, "Guilhem Sempere": true, "Marilyne Summo": true, "Ndomassi Tando": true, "Christine Tranchant-Dubreuil": true }, categories: { "service": true }, room: 'poster_168', poster: 'jobim2020_poster_168.pdf', thumbnail: 'jobim2020_poster_168.jpg', display: true }, { number: 171, title: "A comparison of different approaches to estimate disease similarities", keywords: "Disease similarities, Benchmarking, Correlations and clustering", authors: { "Maxime Delmas": true, "Clément Frainay": true, "Fabien Jourdan": true, "Yoann Pitarch": true }, categories: { }, room: 'poster_171', poster: 'jobim2020_poster_171.pdf', thumbnail: 'jobim2020_poster_171.jpg', display: true }, { number: 173, title: "Manual curation and annotation transfer between genomes of LRR-containing genes", keywords: "LRR-containing genes, gene annotation, Oryza", authors: { "Céline Gottin": true, "Anne Dievart": true, "Nathalie Chantret": true, "Vincent Ranwez": true }, categories: { "evolution": true }, room: 'poster_173', poster: 'jobim2020_poster_173.pdf', thumbnail: 'jobim2020_poster_173.jpg', display: true }, { number: 174, title: "Hybrid de novo genome assembly using Oxford Nanopore Technology, 10X Genomics Linked-Reads sequencing, and Bionano optical map of a non-model species: the case of the melon-cotton aphid Aphis gossypii", keywords: "aphids, NGS, Long reads sequencing, Oxford Nanopore Technology, Optical Map, Linked-reads, 10X-Genomics, de novo hybrid assembly, HPC", authors: { "Jacques Lagnel": true, "Rafael Feriche-Linares": true, "Pierre Bertrand": true, "William Marande": true, "Anne Loiseau": true, "Amalia Sayeh": true, "Maxime Manno": true, "Nathalie Boissot": true }, categories: { "functional genomics": true }, room: 'poster_174', poster: 'jobim2020_poster_174.pdf', thumbnail: 'jobim2020_poster_174.jpg', display: true }, { number: 175, title: "ELTerm: a terminology module for a plant data management system", keywords: "Data management system, Terminology, Ontology, Plant biology", authors: { "Hauguel Lysiane": true, "Tanguy Lallemand": true, "Rayan Eid": true, "Fabrice Dupuis": true, "Sylvain Gaillard": true, "Florian Blessing": true, "Sandra Pelletier": true, "Julie Bourbeillon": true }, categories: { "service": true }, room: 'poster_175', poster: 'jobim2020_poster_175.pdf', thumbnail: 'jobim2020_poster_175.jpg', display: true }, { number: 176, title: "My RNA-tailor is rich : fine modeling of alternative transcripts from long reads ", keywords: "long reads, transcriptome, workflow", authors: { "Cyprien Boree": true, "Aymeric Antoine-Lorquin": true, "Jean-Stéphane Varré": true, "Hélène Touzet": true }, categories: { "NGS": true }, room: 'poster_176', poster: 'jobim2020_poster_176.pdf', thumbnail: 'jobim2020_poster_176.jpg', display: true }, { number: 177, title: "Cross-species single cell RNA-seq data integration to unravel the cells of origin of ATRT", keywords: "rhabdoid tumors, ATRT, single cell RNA-seq, enrichment analysis, deconvolution, cells of origin", authors: { "Mamy Andrianteranagna": true, "Maria-Jesus Lobon Iglesias": true, "Zhi-Yan Han": true, "Mandy Cadix": true, "Julien Masliah-Planchon": true, "Pierre Gestraud": true, "Nicolas Servant": true, "Franck Bourdeaut": true }, categories: { }, room: 'poster_177', poster: '', thumbnail: '', display: false }, { number: 178, title: "A user-friendly R-Shiny interface for accurate viral and bacterial typing without alignment or assembly", keywords: "viral and bacterial typing, phylogenetic tree, pathogens, pipeline, R-shiny application", authors: { "Morgane Bruno": true, "Lionel Bigault": true, "Maud Contrant": true, "Fabrice Touzain": true }, categories: { "evolution": true }, room: 'poster_178', poster: 'jobim2020_poster_178.pdf', thumbnail: 'jobim2020_poster_178.jpg', display: true }, { number: 179, title: "CulebrONT, a snakemake pipeline to benchmark Oxford Nanopore Technologies assemblies and to improve quality control", keywords: "assembly, correction, polishing, nanopore, minion, quality, snakemake pipeline", authors: { "Julie Orjuela-Bouniol": true, "Aurore Comte": true, "Sébastien Ravel": true, "Florian Charriat": true, "Bao Tram Vi": true, "François Sabot": true, "Sebastien Cunnac": true }, categories: { "FAIR": true }, room: 'poster_179', poster: 'jobim2020_poster_179.pdf', thumbnail: 'jobim2020_poster_179.jpg', display: true }, { number: 181, title: "Benchmark of multiple sequence 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JeBIF, ISCB Student Council, Community, Activities", authors: { "Florence Jornod": true, "Slim El Khiari": true, "Xavier Bussell": true, "Julien Fumey": true, "Mathias Galati": true, "Athénaïs Vaginay": true, "Victor Grentzinger": true }, categories: { "service": true }, room: 'poster_198', poster: 'jobim2020_poster_198.pdf', thumbnail: 'jobim2020_poster_198.jpg', display: true }, { number: 199, title: "IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing maps with rejection", keywords: "Non-coding RNA prediction, Machine learning, Self-Organizing Maps (SOM)", authors: { "Ludovic Platon": true, "Farida Zehraoui": true, "Fariza Tahi": true }, categories: { "stat": true }, room: 'poster_199', poster: 'jobim2020_poster_199.pdf', thumbnail: 'jobim2020_poster_199.jpg', display: true }, { number: 200, title: "How to explain bioinformatics to non scientists? Feedback from the experience of RSG France - JeBiF", keywords: "Vulgarisation, Fête de la Science, Pint of Science, Explaining science to the public", authors: { "Slim El Khiari": true, "Xavier Bussell": true, "Stéphanie Chevalier": true, "Julien Fumey": true, "Fabien Genty": true, "Victor Grentzinger": true, "Julie Lao": true, "Marylène Rugard": true, "Athénaïs Vaginay": true, "Amaury Vaysse": true, "Florence Jornod": true }, categories: { "FAIR": true }, room: 'poster_200', poster: 'jobim2020_poster_200.pdf', thumbnail: 'jobim2020_poster_200.jpg', display: true }, { number: 201, title: "Transcriptome Profile of Multiple Sclerosis Patients Treated with Natalizumab: Prediction of Response", keywords: "Multiple Sclerosis, Natalizumab, Transcriptomics, Machine Learning", authors: { "Leila Khajavi": true, "Matthias Zytnicki": true, "Roland Liblau": true }, categories: { }, room: 'poster_201', poster: '', thumbnail: '', display: false }, { number: 202, title: "Efficiency of gene regulatory network inference methods on genomic and transcriptomic data", keywords: "gene regulatory network, inference method, meta-analysis, transcriptome, polymorphism", authors: { "Lise Pomiès": true, "Céline Brouard": true, "Harold Duruflé": true, "Nicolas Langlade": true, "Simon de Givry": true }, categories: { }, room: 'poster_202', poster: 'jobim2020_poster_202.pdf', thumbnail: 'jobim2020_poster_202.jpg', display: true }, { number: 203, title: "Epigenetic Regulations of Inflammation in Cardiovascular Complications of Type 2 Diabetes", keywords: "Enhancer regions, genetic variations, inflammation, Type 2 diabetes, cardiovascular risk", authors: { "Diane Girard": true, "Elena Carcarino": true, "Jean-Baptiste Julla": true, "Louis Potier": true, "Marc Diedisheim": true, "Jean-François Gauthier": true, "Ronan Roussel": true, "Nicolas Venteclef": true, "Claire Vandiedonck": true }, categories: { "functional genomics": true }, room: 'poster_203', poster: 'jobim2020_poster_203.pdf', thumbnail: 'jobim2020_poster_203.jpg', display: true }, { number: 204, title: "A method to classify α-satellites and other short sequences", keywords: "DBSCAN, clustering, alpha-satellites, tandem-repeats, phylogeny", authors: { "Thomas Haschka": true, "Loïc Ponger": true, "Julien Mozziconacci": true, "Christophe Escude": true }, categories: { "NGS": true }, room: 'poster_204', poster: 'jobim2020_poster_204.pdf', thumbnail: 'jobim2020_poster_204.jpg', display: true }, { number: 205, title: "Identifying novel sequence elements involved in transcription initiation in human genome", keywords: "transcription initiation, CAGE, FANTOM, human genome, machine learning", authors: { "Yulia Rodina": true, "Christophe Menichelli": true, "Sophie Lèbre": true, "Laurent Bréhélin": true, "Charles-Henri Lecellier": true }, categories: { "functional genomics": true }, room: 'poster_205', poster: 'jobim2020_poster_205.pdf', thumbnail: 'jobim2020_poster_205.jpg', display: true }, { number: 207, title: "Investigating DNA methylation in IDH mutant acute myeloid leukemia", keywords: "AML, Methylation, IDH, OXPHOS", authors: { "Alexis Hucteau": true, "Lucille Stuani": true, "Ting Xie": true, "Tony Kaoma": true, "Jean Emmanuel Sarry": true, "Vera Pancaldi": true }, categories: { "NGS": true }, room: 'poster_207', poster: 'jobim2020_poster_207.pdf', thumbnail: 'jobim2020_poster_207.jpg', display: true }, { number: 209, title: "A repertoire of Escherichia coli K12 regulatory binding motifs", keywords: "ChIP-seq, transcription factor binding motif, Escherichia coli K12", authors: { "Claire Rioualen": true, "Jacques van Helden": true, "Julio Collado Vides": true }, categories: { }, room: 'poster_209', poster: '', thumbnail: '', display: false }, { number: 210, title: "Investigating the taxonomic and functional diversity of benthic archaeal communities from two South Pacific hadal trenches using high-throughput sequencing data", keywords: "Metagenomics, Microbial ecology, Archaeal diversity, Functional diversity, Hadal trenches", authors: { "Blandine Trouche": true, "Feriel Bouderka": true, "Clemens Schauberger": true, "Julie Poulain": true, "Patrick Wincker": true, "Bo Thamdrup": true, "Ronnie N Glud": true, "Sophie Arnaud-Haond": true, "Loïs Maignien": true }, categories: { "metagenomics": true }, room: 'poster_210', poster: 'jobim2020_poster_210.pdf', thumbnail: 'jobim2020_poster_210.jpg', display: true }, { number: 211, title: "SNPer, a home made interrogation tool for variants and their effect throughout the genome", keywords: "SNP, interrogation, genome, web", authors: { "Frédérique Bitton": true }, categories: { }, room: 'poster_211', poster: '', thumbnail: '', display: false }, { number: 212, title: "Variability in healthy human cytokine responses", keywords: "data integration, linear models, cohort study, immune response", authors: { "Violaine Saint-André": true, "Bruno Charbit": true, "Anne Biton": true, "Vincent Rouilly": true, "Maxime Rotival": true, "Jakob Bergstedt": true, "Etienne Patin": true, "Mathew Albert": true, "Lluis Quintana-Murci": true, "Darragh Duffy": true }, categories: { "system": true }, room: 'poster_212', poster: '', thumbnail: '', display: false }, { number: 213, title: "FAIR_bioinfo : a software perspective of reproducibility of bioinformatics analyses", keywords: "reproducibility, training, data processing", authors: { "Thomas Denecker": true, "Céline Hernandez": true, "Claire Toffano-Nioche": true }, categories: { "FAIR": true }, room: 'poster_213', poster: 'jobim2020_poster_213.pdf', thumbnail: 'jobim2020_poster_213.jpg', display: true }, { number: 214, title: "Feature selection and automatic machine learning identifies translationally regulated mRNAs by the mTOR pathway.", keywords: "Polysome profile, Tranlatome analysis, Clustering, Machine learning", authors: { "Costas Bouyioukos": true, "Manuel Bulfoni": true, "Bertrand Cosson": true }, categories: { }, room: 'poster_214', poster: '', thumbnail: '', display: false }, { number: 215, title: "Genomic SNP detection by RNA-seq: lessons from multi-tissue & multi-population data analysis in chickens.", keywords: "RNA-seq, DNA-seq, SNP detection, chicken application", authors: { "F Jehl": true, "M Bernard": true, "F Degalez": true, "F Lecerf": true, "M Coulee": true, "T Zerjal": true, "F Pitel": true, "C Klopp": true, "S Lagarrigue": true }, categories: { "evolution": true }, room: 'poster_215', poster: 'jobim2020_poster_215.pdf', thumbnail: 'jobim2020_poster_215.jpg', display: true }, { number: 216, title: "Towards CNNs Representations for Small Data Classification", keywords: "", authors: { "Khawla Seddiki": true, "Philippe Saudemont": true, "Frédéric Precioso": true, "Nina Ogrinc": true, "Maxence Wisztorski": true, "Michel Salzet": true, "Isabelle Fournier": true, "Arnaud Droit": true }, categories: { }, room: 'poster_216', poster: 'jobim2020_poster_216.pdf', thumbnail: 'jobim2020_poster_216.jpg', display: true }, { number: 217, title: "Using Neural Networks to Identify Biologically Relevant Features and Predict Cancer Types From Mass Spectrometry Data", keywords: "CNN, Interpretation, Mass Spectrometry, 1D", authors: { "Khawla Seddiki": true, "Frédéric Precioso": true, "Philippe Saudemont": true, "Nina Ogrinc": true, "Maxence Wisztorski": true, "Michel Salzet": true, "Isabelle Fournier": true, "Arnaud Droit": true }, categories: { "stat": true }, room: 'poster_217', poster: 'jobim2020_poster_217.pdf', thumbnail: 'jobim2020_poster_217.jpg', display: true }, { number: 218, title: "Impact of Cultural transmission of reproductive success on genetic diversity", keywords: "genetic diversity, reproductive success, coalescent trees, recombination, human population genetics", authors: { "Jeremy Guez": true, "Romain Laurent": true, "Bruno Toupance": true, "Evelyne Heyer": true, "Frederic Austerlitz": true, "Flora Jay": true }, categories: { "evolution": true }, room: 'poster_218', poster: 'jobim2020_poster_218.pdf', thumbnail: 'jobim2020_poster_218.jpg', display: true }, { number: 220, title: "StatABio Facility: your user-friendly statistics", keywords: "biostatistics, service, interaction, methods, user friendly", authors: { "Manuela Pastore": true, "Emeric Dubois": true, "Christelle Reynes": true }, categories: { "stat": true }, room: 'poster_220', poster: 'jobim2020_poster_220.pdf', thumbnail: 'jobim2020_poster_220.jpg', display: true }, { number: 221, title: "How to choose a reference genome (while waiting for a pangenome)", keywords: "Reference genome, Pangenome, Sequencing technologies, Anopheles gambiae, Oryza glaberrima", authors: { "Clothilde Chenal": true, "Christine Tranchant-Dubreuil": true, "Anna-Sophie Fiston-Lavier": true, "Frédéric Simard": true, "Yves Vigouroux": true, "Michael Fontaine": true, "François Sabot": true, "The Anopheles Gambiae Consortium": true }, categories: { "NGS": true }, room: 'poster_221', poster: 'jobim2020_poster_221.pdf', thumbnail: 'jobim2020_poster_221.jpg', display: true }, { number: 222, title: "The Pole for data analysis of the Muséum National d’Histoire Naturelle", keywords: "Data analysis, Statistical processing, Genes & Genomes", authors: { "Jawad Abdelkrim": true, "Fayçal Allouti": true, "Amandine Blin": true, "Claire Gachon": true, "Julien Mozziconacci": true, "Nicholas Toda": true, "Patricia Wils": true, "Anthony Woo": true }, categories: { }, room: 'poster_222', poster: '', thumbnail: '', display: false }, { number: 223, title: "Pilot study to screen alleles under selection related to drought tolerance in banana", keywords: "NGS, drough, allelic dosage, RNAseq, Ka/Ks", authors: { "Catherine Breton": true, "Alberto Cenci": true, "Nicolas Roux": true, "Mathieu Rouard": true, "Sebastien Carpentier": true }, categories: { "NGS": true }, room: 'poster_223', poster: 'jobim2020_poster_223.pdf', thumbnail: 'jobim2020_poster_223.jpg', display: true }, { number: 224, title: "OMICSity, a database for Luminex immunoassay data storage and analysis", keywords: "Luminex, Database, Proteomic, Biomarker, Windev", authors: { "Corinne Menigot": true, "Luigi Russo": true, "Didier Zugaj": true, "Nicolas Nottet": true, "Romy Rambert": true, "Bruno Mehul": true, "Francesca Zolezzi": true, "Agnes Paquet": true }, categories: { "service": true }, room: 'poster_224', poster: 'jobim2020_poster_224.pdf', thumbnail: 'jobim2020_poster_224.jpg', display: true }, { number: 225, title: "Génération de workflow d’analyse conteneurisé avec interface graphique", keywords: "workflow, automatic generation, graphical user interface, container", authors: { "Mathieu Massaviol": true, "Jimmy Lopez": true, "Remy Dernat": true, "Khalid Belkhir": true }, categories: { "FAIR": true }, room: 'poster_225', poster: 'jobim2020_poster_225.pdf', thumbnail: 'jobim2020_poster_225.jpg', display: true }, { number: 229, title: "Mechanical stress induces activation of the angiotensin II receptor AT2: a molecular dynamic approach", keywords: "AT2R, molecular dynamic simulations, mechanical stress", authors: { "Rym Ben Boubaker": true, "Asma Tiss": true, "Daniel Henrion": true, "Marie Chabbert": true }, categories: { "structure": true }, room: 'poster_229', poster: 'jobim2020_poster_229.pdf', thumbnail: 'jobim2020_poster_229.jpg', display: true }, { number: 230, title: "Molecular mechanisms of the sodium ion binding to G protein coupled receptors", keywords: "sodium ion, allosteric site, GPCRs", authors: { "Asma Tiss": true, "Rym Ben Boubaker": true, "Linda Grimaud": true, "Daniel Henrion": true, "Hajer Guissouma": true, "Marie Chabbert": true }, categories: { "structure": true }, room: 'poster_230', poster: 'jobim2020_poster_230.pdf', thumbnail: 'jobim2020_poster_230.jpg', display: true }, { number: 232, title: "mésocentre Meso@LR", keywords: "High Performance Computing, Massive Data, Data Science", authors: { "Anne Laurent": true, "Anne Coudert": true, "Baptiste Chapuisat": true }, categories: { "service": true }, room: 'poster_232', poster: '', thumbnail: '', display: false }, { number: 300, title: "Joining the Tripal community to efficiently expose your research", keywords: "CMS, Drupal, Tripal, CHADO, Website, HTML", authors: { "Valentin Guignon": true, "Ethalinda K S Cannon": true, "Dorrie Main": true, "Monica Poelchau": true, "Manuel Ruiz": true, "Lacey-Anne Sanderson": true, "Margaret Staton": true, "Jill Wegrzyn": true, "Stephen P Ficklin": true }, categories: { "FAIR": true, "visualization": true, "service": true }, room: 'poster_300', poster: 'jobim2020_poster_300.pdf', thumbnail: 'jobim2020_poster_300.jpg', display: true } ]; /** * END POSTER DATA ******************************************************************************/ } if (typeof jobim.lang == 'undefined') { if ((typeof lang == 'undefined') || ('fr' == lang)) { jobim.lang = 'fr'; } else { jobim.lang = 'en'; } } if (typeof jobim.labels == 'undefined') { jobim.labels = { closed: { en: 'The virtual poster room is currently closed. Please come back later, thanks for your visit.', fr: 'La salle virtuelle des posters est actuellement fermée. Veuillez repasser plus tard, merci pour votre visite.' }, authors: { en: 'Authors', fr: 'Auteurs' }, institutes: { en: 'Institutes', fr: 'Instituts' }, keywords: { en: 'Keywords', fr: 'Mots clés' }, categories: { en: 'Categories', fr: 'Categories' }, room: { en: 'Room', fr: 'Salle' }, pdf: { en: 'Download PDF', fr: 'Télécharger le PDF' }, title_filter: { en: 'Title contains', fr: 'Le titre contient' }, keywords_filter: { en: 'Containing keywords', fr: 'Contenant les mots clés' }, number_filter: { en: 'Poster number', fr: 'Numéro du poster' }, posters_count: { en: 'Displaying', fr: 'Selection de ' }, over: { en: 'over', fr: 'sur' }, posters: { en: 'posters', fr: 'posters' }, NGS: { en: "Algo/NGS", fr: "Algo/NGS" }, service: { en: "Database & Service", fr: "Base de données & service" }, evolution: { en: "Evolution, phylogenetics and population genetics", fr: "Évolution, phylogénétique et génétique des populations" }, 'functional genomics': { en: "Functional genomics", fr: "Génomique fonctionnelle" }, metabolomics: { en: "Metabolomics", fr: "Métabolomique" }, metagenomics: { en: "Metagenomics", fr: "Métagénomique" }, FAIR: { en: "Reproductibility, open science, workflows, FAIR", fr: "Reproductibilité, open science, workflows, FAIR" }, stat: { en: "Statistics, Machine Learning and AI", fr: "Statistiques, Machine Learning et I.A." }, structure: { en: "Structural bioinformatics & Protein annotations", fr: "Bioinformatique Structurelle & Annotation des Protéines" }, system: { en: "Systems Biology", fr: "Biologie des systèmes" }, medicine: { en: "Variant calling & Medicine", fr: "Variant calling & Médecine" }, visualization: { en: "Visualization", fr: "Visualisation" } }; } // Filters data. jobim.filter_list = ['categories', 'authors']; jobim.match_list = ['title', 'keywords', 'number']; jobim.filters = {}; /******************************************************************************/ /** * Tells if a variable is set. */ function jisset(obj) { if ((typeof obj === 'object') && (obj !== null)) { return (0 < Object.keys(obj).length); } else if (Array.isArray(obj)) { return (0 < obj.length); } else { return ((null !== obj) && ('' !== obj)); } } /** * Renders hash data. * * @param hash (hash) * A hash which keys are treated as data values (for unicity). * @param container_class (string) * CSS class name of the container element. * @param element_class (string) * CSS class name used for each element. * @param label (string) * Label for the list of elements. */ function jobim_render_hash(hash, container_class, element_class = null, label = null) { var values_array = []; for (var key in hash) { if (jisset(key)) { values_array.push( '' + key + '' ); } } return '' + (jisset(label) ? '' + label + ': ' : '') + values_array.join(', ') + ''; } /** * Renders poster field. * * @param: value (string) * Field value to render. * @param: element_class (string) * CSS class name used for the element. * @param: label (string) * Label field to render. Can be NULL or empty for no label. * @param container_class (string) * CSS class name of the container element if a label is set. */ function jobim_render_field(value, element_class, label = null, container_class = null) { if (!jisset(value)) { return ''; } var field_html = '' + value + ''; if (jisset(label)) { field_html = '\n' + '' + label + '\n' + field_html + '\n'; } return field_html; } /** * Renders poster number. * * @param: number (string) * Poster number. */ function jobim_render_number(number) { return jobim_render_field('#' + number, 'jobim-poster-number'); } /** * Renders poster title. * * @param: title (string) * Poster title. */ function jobim_render_title(title) { return jobim_render_field(title, 'jobim-poster-title'); } /** * Renders a list of authors. * * @param: authors (hash) * keys are author names. */ function jobim_render_authors(authors) { return jobim_render_hash( authors, 'jobim-poster-authors', 'jobim-poster-author' ); } /** * Renders keywords. * * @param: keywords (hash) * keys are keywords. */ function jobim_render_keywords(keywords) { return jobim_render_field(keywords, 'jobim-poster-keywords', jobim.labels['keywords'][jobim.lang]); } /** * Renders categories. * * @param: categories (hash) * keys are categories. */ function jobim_render_categories(categories) { return jobim_render_hash( categories, 'jobim-poster-categories', 'jobim-poster-category', jobim.labels['categories'][jobim.lang] ); } /** * Renders poster room. * * @param: room (string) * a poster room identifier. */ function jobim_render_room(room) { return '' + jobim.labels['room'][jobim.lang] + ': ' + room + '\n' ; } /** * Renders poster PDF link. * * @param: pdf (string) * a poster pdf file name. */ function jobim_render_pdf(pdf) { return '' + '' + jobim.labels['pdf'][jobim.lang] + '\n' ; } /** * Renders poster thumbnail. * * @param: thumbnail (string) * a poster thumbnail image file name. */ function jobim_render_thumbnail(thumbnail) { var html_block = ''; if (jisset(thumbnail)) { html_block = '' + 'Poster preview' + '\n' ; } else { html_block = 'No poster preview available\n'; } return html_block; } /** * Renders a poster object as HTML. * * @param poster (object) * a poster hash from jobim.posters array. * * @param index (int) * The index of the poster in the displayed array. Can be null. */ function jobim_render_poster(poster, index = null) { var poster_html = '
\n ' + jobim_render_number(poster['number']) + ' ' + jobim_render_title(poster['title']) + '
\n ' + jobim_render_authors(poster['authors']) + '
\n ' + (jisset(poster['categories']) ? jobim_render_categories(poster['categories']) + '
\n ' : '') + (jisset(poster['keywords']) ? jobim_render_keywords(poster['keywords']) + '

\n ' : '') + jobim_render_thumbnail(poster['thumbnail']) + '
\n ' + (false && jisset(poster['room']) ? jobim_render_room(poster['room']) + '\n ' : '') + (jisset(poster['poster']) ? jobim_render_pdf(poster['poster']) + '\n' : '') + '
'; return poster_html; } /** * Update Poster Gallery display. */ function jobim_update_gallery() { // Clear gallery. $('#jobim_poster_gallery').empty(); var displayed_poster_count = 0; var poster_count = 0; // Update poster display status. jobim.posters.forEach(function (poster) { if (poster['init_display']) { ++poster_count; } poster['display'] = false; var category_match = ( ((0 < $('#jobim_categories_filter input:checked').length) && (0 < $('#jobim_categories_filter input:not(:checked)').length)) ? false : true ); // Categories. for (key in poster['categories']) { if (jobim.filters['categories'][key]) { category_match = true; } } // Authors. var author_match = (('' != $('#jobim_authors_select').val()) ? false : true); if (!author_match) { for (key in poster['authors']) { if (jobim.filters['authors'][key]) { author_match = true; } } } // Final display status. if (category_match && author_match && poster['match_title'] && poster['match_keywords'] && poster['match_number'] ) { poster['display'] = poster['init_display']; // poster['display'] = ( // jisset(poster['title']) && jisset(poster['poster']) // ? poster['init_display'] // : false // ); if (poster['display']) { ++displayed_poster_count; } } }); // Update HTML. $('#jobim_poster_count').html( jobim.labels['posters_count'][jobim.lang] + ' ' + displayed_poster_count + ' ' + jobim.labels['over'][jobim.lang] + ' ' + poster_count + ' ' + jobim.labels['posters'][jobim.lang] ); jobim.posters.forEach(function (poster) { if (poster['display']) { $('#jobim_poster_gallery').append(jobim_render_poster(poster)); } }); } /** * Initialize filters possible values. */ function jobim_init_filters() { var key; jobim.filter_list.forEach(function (filter_name) { jobim.filters[filter_name] = {}; }); jobim.posters.forEach(function (poster, index) { // Save initial display status. jobim.posters[index]['init_display'] = poster['display']; jobim.match_list.forEach(function (match_name) { poster['match_' + match_name] = true; }); jobim.filter_list.forEach(function (filter_name) { for (key in poster[filter_name]) { if (jisset(key)) { jobim.filters[filter_name][key] = true; } } }); }); } /** * Render filter dropdown. */ function jobim_render_filter_dropdown(filter_name, filter_label) { // Label. var $filter = $( '
' + jobim.labels[filter_label][jobim.lang] + ': 
' ); // Dropdown and its behavior. $('') .appendTo($filter) .append('\n') .on('change', function () { // An element has been selected. if ('' != $(this).val()) { for (key in jobim.filters[filter_name]) { if ($(this).val() == key) { // Selected element. jobim.filters[filter_name][key] = true; } else { // Other unselected element. jobim.filters[filter_name][key] = false; } } } else { // No element selected, disable filter (all elements "on"). for (key in jobim.filters[filter_name]) { jobim.filters[filter_name][key] = true; } } jobim_update_gallery(); }) ; // Now add elements to the dropdown list. var elements = []; for (key in jobim.filters[filter_name]) { elements.push(key); } // Sort elements. elements = elements.sort(Intl.Collator().compare); // Add options. elements.forEach(function (element) { $filter.find('#jobim_' + filter_name + '_select') .append('\n') ; }); return $filter; } /** * Render filter checkboxes. */ function jobim_render_filter_checkboxes(filter_name, filter_label) { // Filter container. var $filter = $( '

' ); // Master checkbox behavior. $filter.find('> input.jobim-master-checkbox') .on('click', function () { $filter.find('input.jobim-' + filter_name).prop('checked', this.checked); for (key in jobim.filters[filter_name]) { jobim.filters[filter_name][key] = this.checked; } jobim_update_gallery(); }) ; var $checkbox_group = $filter.find('div.jobim-checkbox-group'); // Filtering values. for (key in jobim.filters[filter_name]) { var $checkbox_element = $('
'); var checkbox_id = 'jobim_' + filter_name + '_' + key.replace(/\W+/g, '_'); $( '' ) .appendTo($checkbox_element) .on('change', function() { jobim.filters[filter_name][$(this).val()]= $(this).prop('checked'); jobim_update_gallery(); }) ; var label = key; if (key in jobim.labels) { label = jobim.labels[key][jobim.lang]; } $checkbox_element .append(' '); $checkbox_group .append($checkbox_element); } $filter.append('
'); return $filter; } /** * Render filter text. */ function jobim_render_filter_text(filter_name, filter_label) { // Filter container. var $filter = $( '
 
' ); // Text filtering behavior. $filter.find('#jobim_' + filter_name + '_filter_text') .on('input', function () { if (jisset($(this).val())) { var search_text = $(this).val().toLocaleLowerCase(); // Update posters' matching status. jobim.posters.forEach(function (poster) { var poster_display = false; if (0 <= (''+poster[filter_name]).toLocaleLowerCase().indexOf(search_text)) { poster_display = true; } poster['match_' + filter_name] = poster_display; }); } else { // No text, show all. jobim.posters.forEach(function (poster) { poster['match_' + filter_name] = true; }); } jobim_update_gallery(); }) ; return $filter; } /** * Render filter bar. */ function jobim_render_filters() { var key; $('#jobim_poster_browser').prepend('
'); // Categories filter. $('#jobim_poster_filters').append( jobim_render_filter_checkboxes('categories', 'categories') ); $('#jobim_poster_filters').append( '
' ); // Title filter. $('#jobim_poster_filters').append( jobim_render_filter_text('title', 'title_filter') ); $('#jobim_poster_filters').append( '
' ); // Keywords filter. $('#jobim_poster_filters').append( jobim_render_filter_text('keywords', 'keywords_filter') ); $('#jobim_poster_filters').append( '
' ); // Authors filter. $('#jobim_poster_filters').append( jobim_render_filter_dropdown('authors', 'authors') ); $('#jobim_poster_filters').append( '
' ); // Number filter. $('#jobim_poster_filters').append( jobim_render_filter_text('number', 'number_filter') ); $('#jobim_poster_filters').append( '
' ); } /******************************************************************************/ // Initialize the whole broswer. $(function() { var url_params = new URLSearchParams(window.location.search); var poster_bypass = url_params.get('poster_bypass'); // Merci à ceux qui utilisent 'poster_bypass' de le garder pour eux. ;-) if (jobim.poster_show || poster_bypass) { jobim_init_filters(); jobim_render_filters(); $('#jobim_poster_browser') .append('
') .append(''); jobim_update_gallery(); } else { $('#jobim_poster_browser') .append('
' + jobim.labels['closed'][jobim.lang] + '
'); } });